diff --git a/docs/source/biosimdb/join_instructions.rst b/docs/source/biosimdb/join_instructions.rst index 2bc7f4c..09b8c70 100644 --- a/docs/source/biosimdb/join_instructions.rst +++ b/docs/source/biosimdb/join_instructions.rst @@ -57,24 +57,4 @@ Fill in the short webform with your details and click register. If successful, you will receive an email from PSDI, requesting confirmation of your account, to the email address you have manually registered with. Please note, this may take a few hours to be processed. If there are any further delays, please contact PSDI support directly. -c). BioSimDB Community Membership ---------------------------------- - -.. note:: - The process for joining the BioSimDB community may change and become more streamlined in the future. Please follow the steps below at present. - -Once you have successfully logged into PSDI community data collections, you can request membership specifically to the `BioSimDB community `_. - -.. image:: ../_static/psdi/3_membership.png - :width: 800 - :align: center - -We operate a permissive policy for accepting researchers who wish to share their data with the BioSim community and beyond. Please provide your name, email you used to log into PSDI and a (very) brief summary of what data you would like to upload to BioSimDB. - -.. image:: ../_static/psdi/3_request_form.png - :width: 600 - :align: center - -You will receive an email invitation from PSDI to join BioSimDB. Once you have accepted this email invitation, you will have access to submit your simulation data to BioSimDB! - Please next have a look at our guide on how to submit data to BioSimDB via the BiSimDB Interface. diff --git a/docs/source/biosimdb/submit_instructions.rst b/docs/source/biosimdb/submit_instructions.rst index 744e765..387caa9 100644 --- a/docs/source/biosimdb/submit_instructions.rst +++ b/docs/source/biosimdb/submit_instructions.rst @@ -1,9 +1,9 @@ 2. Submit Data to BioSimDB ========================== -The ``biosimdb-interface`` is hosted as a webform, which automatically extracts useful data that describes a molecular dynamics simulation. Whenever you share your data, include this metadata with the simulation files to make your data more findable, accessible, interoperable and reuseable (`FAIR `_). +The ``biosimdb-interface`` is hosted as a deposition webform, which automatically extracts useful data that describes a molecular dynamics simulation. Whenever you share your data, include this metadata with the simulation files to make your data more findable, accessible, interoperable and reuseable (`FAIR `_). -To submit data to BioSimDB via our self-hosted webform, users are encouraged to first create an account with PSDI and join the BioSimDB community. +To submit data to BioSimDB via our self-hosted webform, users are encouraged to first create an account with PSDI. Once you have successfully joined the `BioSimDB `_ community on PSDI community data collections, you are ready to submit your data! @@ -15,10 +15,9 @@ Steps to Extract Simulation Metadata 1. To extract simulation metadata, upload a topology and corresponding trajectory files to the "BioSim Data Extraction & Submission Form". - - Optionally, upload an `aiida archive file `_ containing the simulation provenance to extract further information about the simulation protocol. - Multiple trajectory files can be uploaded with a single associated topology file, both file types are required. - Various simulation file formats are accepted, provided they can be read using `MDAnalysis `_, please ensure your files are compatible. - - This form uses the `biosim-schema `_ to define and group BioSim metadata. Missing terms or units? Please considering raising an issue or contributing to the `schema `_. + - This form uses the `biosim-schema `_ to define and group BioSim metadata. Missing terms or units? Please consider raising an issue or contributing to the `schema `_. 2. Click "Extract Metadata", this will automatically populate applicable files in the webform.