added -frm 3 (FRM_ONE) for 1-based inclusive coords (Ensembl) #5
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Hi @hani-girgis (cc @ens-carlos), I was eventually able to compile Red.
I have added one more format for the exported repeat coordinates.
This is internally named FRMT_ONE and stands for 1-based inclusive coords, as used in Ensembl.
It can be requested with -frm 3 and produces files with .tsv extension.
Let me know if you need further information,
Bruno