diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index af3eb03..8874b0a 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -33,7 +33,7 @@ repos:
 
 - repo: https://github.com/astral-sh/ruff-pre-commit
   # Ruff version.
-  rev: v0.16.2
+  rev: v0.16.8
   hooks:
     # Run the linter.
     - id: ruff-check
@@ -55,7 +55,7 @@ repos:
 #   - id: codespell
 
 - repo: https://github.com/PyCQA/bandit
-  rev: 1.7.9
+  rev: 1.9.4
   hooks:
     - id: bandit
       args: ["-c", "pyproject.toml"]
diff --git a/README.md b/README.md
index fcd16aa..7f3b14c 100644
--- a/README.md
+++ b/README.md
@@ -71,7 +71,9 @@ To create a `SummarizedExperiment`,
 from summarizedexperiment import SummarizedExperiment
 
 tse = SummarizedExperiment(
-    assays={"counts": counts}, row_data=row_data, column_data=col_data,
+    assays={"counts": counts},
+    row_data=row_data,
+    column_data=col_data,
     metadata={"seq_platform": "Illumina NovaSeq 6000"},
 )
 ```
@@ -93,8 +95,10 @@ from summarizedexperiment import RangedSummarizedExperiment
 from genomicranges import GenomicRanges
 
 trse = RangedSummarizedExperiment(
-    assays={"counts": counts}, row_data=row_data,
-    row_ranges=GenomicRanges.from_pandas(row_data.to_pandas()), column_data=col_data
+    assays={"counts": counts},
+    row_data=row_data,
+    row_ranges=GenomicRanges.from_pandas(row_data.to_pandas()),
+    column_data=col_data,
 )
 ```