compile error

[zhuxy-USTC]

make[4]: Entering directory '/staff/zhuxianyu/envir/pnetcdf-1.11.2/src/drivers/common'
CC dtype_decode.lo
CC hash_map.lo
CC error_posix2nc.lo
CC ncx.lo
CC convert_swap.lo
dtype_decode.c: In function ‘ncmpii_dtype_decode’:
dtype_decode.c:390:14: error: ‘MPI_COMBINER_HVECTOR_INTEGER’ undeclared (first use in this function); did you mean ‘MPI_COMBINER_F90_INTEGER’?
390 | case MPI_COMBINER_HVECTOR_INTEGER:
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
| MPI_COMBINER_F90_INTEGER
dtype_decode.c:390:14: note: each undeclared identifier is reported only once for each function it appears in
dtype_decode.c:396:14: error: ‘MPI_COMBINER_HINDEXED_INTEGER’ undeclared (first use in this function); did you mean ‘MPI_COMBINER_HINDEXED_BLOCK’?
396 | case MPI_COMBINER_HINDEXED_INTEGER:
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| MPI_COMBINER_HINDEXED_BLOCK
dtype_decode.c:416:14: error: ‘MPI_COMBINER_STRUCT_INTEGER’ undeclared (first use in this function); did you mean ‘MPI_COMBINER_F90_INTEGER’?
416 | case MPI_COMBINER_STRUCT_INTEGER:
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~
| MPI_COMBINER_F90_INTEGER
make[4]: *** [Makefile:525: dtype_decode.lo] Error 1
make[4]: *** Waiting for unfinished jobs....
make[4]: Leaving directory '/staff/zhuxianyu/envir/pnetcdf-1.11.2/src/drivers/common'
make[3]: *** [Makefile:443: all] Error 2
make[3]: Leaving directory '/staff/zhuxianyu/envir/pnetcdf-1.11.2/src/drivers/common'
make[2]: *** [Makefile:463: all-recursive] Error 1
make[2]: Leaving directory '/staff/zhuxianyu/envir/pnetcdf-1.11.2/src/drivers'
make[1]: *** [Makefile:463: all-recursive] Error 1
make[1]: Leaving directory '/staff/zhuxianyu/envir/pnetcdf-1.11.2/src'
make: *** [Makefile:520: all-recursive] Error 1

[wangdong1991]

When installing PnetCDF, the error "MPI_COMBINER_STRUCT_INTEGER undeclared" indicates that the compiler cannot find the variable or constant declared as MPI_COMBINER_STRUCT_INTEGER. Typically, MPI_COMBINER_STRUCT_INTEGER is located in the mpi.h file. This may suggest that the system lacks the MPI library or the MPI environment is not properly configured. It is recommended to first check if the MPI library is correctly installed, and then ensure that the correct MPI compiler is specified during the configuration of PnetCDF.

[zhuxy-USTC]

I want to compile GOMO on Sunway Supercomputer, which compile flag should be set? I must use swgcc/swg++ or mpicxx on Sunway? ***@***.*** From: wangdong1991 Date: 2024-05-26 10:15 To: AI4EarthLab/OpenArray CC: zhuxy-USTC; Author Subject: Re: [AI4EarthLab/OpenArray] compile error (Issue #22) When installing PnetCDF, the error "MPI_COMBINER_STRUCT_INTEGER undeclared" indicates that the compiler cannot find the variable or constant declared as MPI_COMBINER_STRUCT_INTEGER. Typically, MPI_COMBINER_STRUCT_INTEGER is located in the mpi.h file. This may suggest that the system lacks the MPI library or the MPI environment is not properly configured. It is recommended to first check if the MPI library is correctly installed, and then ensure that the correct MPI compiler is specified during the configuration of PnetCDF. ― Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you authored the thread.Message ID: ***@***.***>

[wangdong1991]

When compiling MPI programs on Sunway, it is recommended to use the mpiswgfortran/mpiswgcc/mpiswg++ compilers. To set up the environment for these compilers, you need to execute the following command:
source /usr/sw-mpp/swcc/swgcc530-tools/setenv-release release
You may also refer to the Sunway user manual for more information on compiling and running programs on Sunway.
Please note that when finishing PnetCDF configuration, carefully check the output information of the configure script to ensure that the compiler and environment are the Sunway versions, rather than x86.
After the installation of PnetCDF, it is strongly recommended to submit the examples in the PnetCDF library's "example" directory to the Sunway computing queue to ensure that the installation is correct before proceeding with the installation of OpenArray.

[zhuxy-USTC]

Thanks a lot. When I check how to run the code for GOMO, I find directory "data". Weather I only replace the file "seamount65_49_21.nc", the code will run with different data? If it is convenient for you, I wonder if I can consult you through wechat. ***@***.*** From: wangdong1991 Date: 2024-05-26 10:46 To: AI4EarthLab/OpenArray CC: zhuxy-USTC; Author Subject: Re: [AI4EarthLab/OpenArray] compile error (Issue #22) When compiling MPI programs on Sunway, it is recommended to use the mpiswgfortran/mpiswgcc/mpiswg++ compilers. To set up the environment for these compilers, you need to execute the following command: source /usr/sw-mpp/swcc/swgcc530-tools/setenv-release release You may also refer to the Sunway user manual for more information on compiling and running programs on Sunway. Please note that when finishing PnetCDF configuration, carefully check the output information of the configure script to ensure that the compiler and environment are the Sunway versions, rather than x86. After the installation of PnetCDF, it is strongly recommended to submit the examples in the PnetCDF library's "example" directory to the Sunway computing queue to ensure that the installation is correct before proceeding with the installation of OpenArray. — Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you authored the thread.Message ID: ***@***.***>

[wangdong1991]